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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs17162977 chr1:28498881 C/G 2.67E-5 192 13.83 8.23 0 KM Plot
LIHC rs17462727 chr4:44703154 T/C 2.82E-6 192 3.37 13.55 16.07 KM Plot
LIHC rs17572429 chr4:44691021 C/T 2.82E-6 192 3.37 13.55 16.07 KM Plot
LIHC rs17667053 chr16:72147431 C/G 1.72E-6 192 13.08 14.9 1.13 KM Plot
LIHC rs17807673 chr20:18513372 A/G 3.16E-6 192 0.57 13.03 13.6 KM Plot
LIHC rs17837965 chr1:22394625 A/G 3.87E-5 192 13.15 14.03 9.43 KM Plot
LIHC rs17844052 chr13:46650788 A/G 4.44E-5 191 13.28 13.92 12.13 KM Plot
LIHC rs17844080 chr13:46644405 T/C 0.000348 188 12.95 17.15 9.93 KM Plot
LIHC rs17844113 chr13:46640275 C/CAT 7.31E-5 189 12.87 20.15 12.07 KM Plot
LIHC rs178476 chr14:58519444 C/T 5.69E-10 192 13.57 12.62 0.63 KM Plot
LIHC rs1788472 chr21:44408402 G/T 6.15E-6 191 2.7 13.85 13.65 KM Plot
LIHC rs181725228 chr2:86414348 T/A 0.000272 191 13.6 1.72 10.98 KM Plot
LIHC rs1844804 chr4:44646711 G/A 6.05E-5 189 5.7 13.17 16.6 KM Plot
LIHC rs184976 chr5:154716371 T/G 4.2E-9 188 1.03 25.67 13.08 KM Plot
LIHC rs1852015 chr7:64436980 A/C 4.0E-12 192 1.77 5.7 13.97 KM Plot